HapMap3 data release #2, January 2009, on NCBI B36 assembly, dbSNP b126 -- This release contains genotypes and frequencies from phase III of the HapMap project. For a list of SNPs with allele flips and indels, see http://ftp.hapmap.org/genotypes/2009-01_phaseIII/hapmap_format/excluded/ For additional information, please see the accompanying README document: http://ftp.hapmap.org/genotypes/2009-01_phaseIII/00README.txt Genotyped non-redundant QC+ SNPs: ASW CEU CHB CHD GIH JPT LWK MEX MKK TSI YRI chr1 125,166 112,358 105,414 103,708 111,743 103,386 122,491 113,048 123,159 112,834 120,109 chr2 126,474 113,979 106,561 105,180 113,347 104,275 124,131 113,997 124,680 114,425 122,271 chr3 104,860 94,967 89,258 87,826 94,385 87,154 102,920 94,616 103,431 95,329 100,900 chr4 94,830 85,662 80,300 79,035 85,353 78,578 93,106 84,255 93,831 86,345 91,991 chr5 95,692 87,409 82,150 81,157 87,121 80,475 93,836 86,645 94,548 87,647 92,245 chr6 99,333 91,828 86,801 85,082 90,710 84,424 96,848 90,522 97,457 92,314 95,012 chr7 82,178 75,460 71,104 70,022 75,160 69,464 80,669 74,878 81,171 75,900 79,123 chr8 82,406 74,720 70,152 68,789 74,807 68,140 80,795 74,056 81,305 75,166 79,183 chr9 69,345 63,745 60,376 59,262 63,740 59,096 67,501 63,040 68,068 64,017 66,381 chr10 79,805 73,116 69,032 67,592 72,894 66,940 77,929 73,680 78,508 73,287 76,571 chr11 76,820 69,411 65,806 64,480 69,182 64,349 75,040 69,046 75,555 69,852 73,787 chr12 74,290 67,790 63,905 62,783 67,738 62,335 72,400 67,875 72,875 67,478 70,562 chr13 57,082 52,061 48,509 47,806 51,852 47,475 56,138 51,151 56,677 52,346 55,355 chr14 49,241 44,727 42,446 41,557 44,698 41,344 48,274 44,830 48,553 45,153 47,311 chr15 45,562 40,853 39,242 38,649 41,087 38,383 44,793 40,940 44,855 41,301 43,733 chr16 48,073 42,843 40,050 39,489 42,710 39,154 47,213 43,122 47,204 43,081 46,264 chr17 40,777 36,644 34,141 33,630 36,357 33,594 39,990 36,920 39,985 36,980 38,982 chr18 44,892 40,241 38,269 37,267 40,082 36,974 44,090 40,386 44,294 40,511 43,438 chr19 27,756 25,349 23,853 23,528 25,036 23,600 27,497 25,773 27,156 25,312 26,772 chr20 38,747 35,305 32,924 32,237 34,992 32,127 38,016 35,679 38,227 35,327 37,359 chr21 21,186 19,366 18,391 18,143 19,391 18,031 20,802 19,265 20,964 19,620 20,461 chr22 21,786 19,679 18,614 18,184 19,753 18,131 21,163 19,693 21,247 19,944 20,479 chrX 54,720 44,577 40,925 40,409 45,322 39,480 53,704 46,475 53,486 45,376 52,694 chrM 71 50 39 44 59 39 71 34 77 60 80 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Total 1,561,092 1,412,140 1,328,262 1,305,859 1,407,519 1,296,948 1,529,417 1,409,926 1,537,313 1,419,605 1,501,063 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- hapmap-help@ncbi.nlm.nih.gov