2013-06-14: HapMap data conversion tool
There are several inquires for a conversion tool to convert HapMap data into the VCF format. Please take a look of The Genome Analysis Toolkit (by Broad Institute).
2012-12-06: Downtime for hardware maintenance
From December 15 - 16, Hapmap site will be taken offline for an internal hardware maintenance. Sorry for the inconvenience.
2011-06-13: HapMap help desk announcement
There was a problem with the HapMap help desk system. In the past several weeks, emails sent to email@example.com did not reach the help desk, and thus user requests were not addressed. Please resend your email request if you sent emails to the HapMap help desk in the past several weeks. Sorry for the inconvenience.
2011-04-20: Hapmap help desk service interruption notice
There will be no help desk support from 05/03/2011 to 05/23/2011. Sorry for the inconvenience.
2011-02-02: Haploview issues with rel 28 data
Recently, there are several questions about Haploview data format errors when users tried to analyze HapMap release 28 data. The current Haploview version (4.2) does not recognize the new individuals in release 28 and the software will generate an error similar to "Hapmap data format error: NA18876" when trying to open the data.
Haploview is developed and maintained by an organization different from HapMap. Please contact Haploview help desk (firstname.lastname@example.org) for questions specific to this software.
2011-01-19: HapMap phase II recombination rate on GRCh37
The liftover of the HapMap II genetic map from human genome build b35 to GRCh37 is available. Data is available for bulk download.
2010-08-18: HapMap Public Release #28
Genotypes and frequency data in hapmap format are now available for data in merged HapMap phases I+II+III release #28 (NCBI build 36, dbSNP b126). Data is available for bulk download and also available for browsing. Click here to read the latest release notes.
2010-05-28: HapMap3 Public Release #3
Genotypes and frequency data in hapmap format are now available for data in HapMap phase 3 release #3 (NCBI build 36, dbSNP b126). Data is available for bulk download and also available for browsing. Click here to read the latest release notes.
2010-05-28: HapMap3 CNV Genotypes
Copy Number Variation genotypes for HapMap phase samples are available for bulk download.
2009-12-10: Corrected HapMap3 phased haplotypes available for chromosome X
Phased haplotypes for consensus HapMap3 release 2 data for chromosome X has been corrected and the new data are now available for bulk download. Sorry for any inconvenience this might have caused.
2009-12-02: HapMap3 phased haplotypes available for chromosome X
Phased haplotypes for consensus HapMap3 release 2 data has been phased for chromosome X and are now available for bulk download. [Update: The downloading was disabled because several users have found that there are repeating data in some of the chrX phasing data files. The data source is being contacted and the downloading will be enabled as soon as the problem is cleared.]
2009-11-18: Short downtime for hardware maintenance
There will be a 30-minute downtime for Hapmap site on Nov. 23, 2009 between 8:30 am - 9:00 am (EST). Sorry for any inconvenience. [Update: Maintenance completed.]
2009-11-05: NCBI Scheduled maintenanceNCBI servers will undergo maintenance beginning November 13 at 3:00 p.m. to November 14 at 8:00 p.m. (EST). Therefore, some NCBI services may be intermittently slow or inaccessible. Please contact NCBI with concerns: info at ncbi.nlm.nih.gov. [Update: NCBI Scheduled maintenance compleleted.]
2009-11-03: Database maintenance notice HapMap is scheduled to have a database maintenance from 5:00pm 11/06/2009 - 8:00am 11/09/2009 EST. The site will be inaccessible during the maintainence. Sorry for the inconvenience. [Update: Database maintenance compleleted.]
2009-04-02: HapMap3 CEL files available Raw signal intensity data from HapMap3 genotypes on the Genome-Wide Human SNP Array 6.0 are now available for bulk download.
2009-02-09: HapMap3 Phased Haplotypes available Phased haplotypes for consensus HapMap3 release 2 data has been phased for autosomes are now available for bulk download.
2009-02-06: HapMap Public Release #27 (merged II+III)
Genotypes and frequency data for the three phases of the project (I+II: rel #24 and III: release #2), were combined in NCBI build 36 (dbSNP b126) coordinates. Data is available for downloading and also available for browsing. Click here to read the latest release notes.
2009-01-07: HapMap Phase 3 draft 2 release available for download
Genotypes and frequency data for phase 3 (NCBI build 36, dbSNP b126) of the HapMap are available for bulk download. This dataset will subsequently be merged with phase I+II data, and once merged, the complete dataset will be made available in the HapMap genome browser and HapMart utility. Here are some notes and SNP counts for this dataset.
- Old News